This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HWJZ.1

Turkey/LOC_001HWJZ.1/2023-06-03
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2023-06-03
Earliest release date
2026-04-19
Sampling location
Turkey (Sivas, Zara, Akoren)
Isolate name
TRKAU/T-360-5/Zara/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-30 08:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-19
INSDC accession M segment

Host

Host

Submission details

Submission ID
PX874956.1.M
Submitting group
Date submitted
2026-04-30 08:49:45 UTC
Date released
2026-04-30 08:58:38 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
1059
Total inserted nucs M segment
1
Total deleted nucs M segment
3
Length M segment
5338 (97.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T36A
  • G46A
  • A47G
  • T63C
  • T64C
  • T67A
  • G72C
  • A76G
  • T78C
  • G80A
  • T81C
  • A84G
  • C88T
  • T90C
  • T96C
  • T98C
  • C99T
  • G103A
Deletions

M segment

323-325
Insertions

M segment

ins_5167:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:M1T
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:C15L
  • GPC:L17R
  • GPC:K19G
  • GPC:T20A
  • GPC:N21H
  • GPC:P23Q
  • GPC:H24S
  • GPC:G26A
  • GPC:N31G
Deletions

GPC

GPC:80
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue