This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HUH3.1

Turkey/LOC_001HUH3.1/2023-07-14
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lyth, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2023-07-14
Earliest release date
2026-04-19
Sampling location
Turkey (Sivas, Zara, Kurucaabat)
Isolate name
TRKAU/T-435-6/Zara/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-30 08:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-19
INSDC accession S segment

Host

Host

Submission details

Submission ID
PX874876.1.S
Submitting group
Date submitted
2026-04-30 08:49:45 UTC
Date released
2026-04-30 08:58:38 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
247
Total inserted nucs S segment
1
Length S segment
1647 (91.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • T33C
  • G34T
  • A51G
  • T63C
  • A65G
  • A93G
  • A98T
  • C99T
  • G118A
  • C126T
  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
Deletions
N/A
Insertions

S segment

ins_0:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N9S
  • NP:Y20F
  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:D199E
  • NP:K265R
  • NP:R270K
  • NP:A307P
  • NP:Y311F
  • NP:V327I
  • NP:N419S
  • NP:R428K
Deletions
N/A
Insertions
N/A

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