This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ETN1.1

Kenya/LOC_001ETN1.1/2024
J. B. Richardson

United States Army Medical Research Institute of Infectious Diseases, Center for Genome Science

Sample details

Collection date
2024
Earliest release date
2026-03-18
Sampling location
Kenya
Isolate name
T352

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-03-18
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
PX753792.1.L/PX753793.1.M/PX753794.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
670
Total deleted nucs M segment
1
Length M segment
5346 (98%)
Variant M segment
False
Total SNPs S segment
44
Length S segment
1384 (76.6%)
Variant S segment
False
Total SNPs L segment
832
Total unknown nucs L segment
36
Length L segment
11741 (96.7%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T34C
  • T49C
  • C63G
  • C64T
  • T65C
  • T70C
  • G93A
  • T106C
  • A124G
  • T157C
  • T160C
  • T163C
  • T202C
  • T229C
  • A238T
  • T254A
  • A262G
  • A268G

M segment

  • G65A
  • G80A
  • A83G
  • A84G
  • G103A
  • T115C
  • T116C
  • C118T
  • T122C
  • G124A
  • A127G
  • C133T
  • A139G
  • A143G
  • A149C
  • C151T
  • C155T
  • A159G

S segment

  • A309G
  • A311G
  • G330A
  • G339A
  • T387C
  • A393G
  • C481T
  • A528G
  • A570G
  • G765A
  • A801G
  • A816G
  • T831C
  • T864C
  • C909T
  • G948A
  • C960T
  • G1014A
Deletions

M segment

5168
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:F10L
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H24R
  • GPC:G26E
  • GPC:E28G
  • GPC:N31K
  • GPC:H33D
  • GPC:M35V
  • GPC:P38L
  • GPC:D39G
  • GPC:S41N
  • GPC:Q42L
  • GPC:P46H
  • GPC:A51V
  • GPC:V54I
  • GPC:P58L

NP

  • NP:K91R
  • NP:I482V

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:N206H
  • RdRp:V352I
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:S596G
  • RdRp:N647S
  • RdRp:T757A
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:Q780K
  • RdRp:I783T
  • RdRp:E785D
Deletions
N/A
Insertions
N/A

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