This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ETL5.1

Cameroon/LOC_001ETL5.1/2023-11-06
A. Namekong Fokeng, A. Paguem, M. Gasparine, K. Tanyi Manchang, F. Fewou Mfoujouem, S. Mvodo, R. Charrel, X. De Lamballerie & A. Falchi

Unite des Virus Emergents, Universite de Corse, Sciences et Techniques

Sample details

Collection date
2023-11-06
Earliest release date
2025-12-28
Sampling location
Cameroon
Isolate name
11-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-12-28
INSDC accession M segment

Submission details

Submission ID
PX659870.1.M
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
380
Total inserted nucs M segment
37
Total deleted nucs M segment
2295
Total frame shifts M segment
6
Frame shifts M segment
GPC:434-511(nt:1387-1621),GPC:551-582(nt:1739-1833),GPC:1035-1102(nt:3189-3394),GPC:1330-1434(nt:4074-4389),GPC:1622-1633(nt:4952-4987),GPC:1647-1685(nt:5027-5143)
Length M segment
1459 (68.1%)
Variant M segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T1330A
  • G1331A
  • A1332C
  • A1334G
  • T1335A
  • A1338C
  • G1340A
  • C1343A
  • T1344C
  • T1345A
  • T1347A
  • T1351A
  • C1352G
  • A1353T
  • G1355A
  • T1357A
  • G1358A
  • A1360T
Deletions

M segment

1472-1493, 1622-1646, 1834, 1858-3147, 3188, 3295, 3361, 3395, 3670-4073, 4390-4937, 4988
Insertions

M segment

ins_1386:CTCGGCCCATCACCCCACCCCTCCACTGTCAC, ins_1738:A, ins_3316:T, ins_4336:G, ins_4951:C, ins_5026:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:G118T
  • GPC:P121M
  • GPC:P123H
  • GPC:T124P
  • GPC:R126I
  • GPC:S128E
  • GPC:S131T
  • GPC:S132A
  • GPC:P133S
  • GPC:S134Y
  • GPC:P136A
  • GPC:T138A
  • GPC:S139H
  • GPC:Q140H
  • GPC:G141P
  • GPC:H143P
  • GPC:Y144P
  • GPC:P145L
Deletions

GPC

GPC:224-433, GPC:512-525, GPC:592-1021, GPC:1034, GPC:1103, GPC:1195-1329, GPC:1435-1618, GPC:1634
Insertions
N/A

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