This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ETBQ.1

Guinea/LOC_001ETBQ.1/2024-12-13
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-13
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
742

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
PV987608.1.L/PV987600.1.M/PV987592.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
133
Total inserted nucs S segment
2
Total deleted nucs S segment
7
Total unknown nucs S segment
209
Length S segment
1646 (79.8%)
Variant S segment
False
Total SNPs L segment
257
Total inserted nucs L segment
3
Total unknown nucs L segment
1227
Length L segment
11970 (88.7%)
Variant L segment
False
Total SNPs M segment
271
Total unknown nucs M segment
704
Length M segment
3560 (52.3%)
Variant M segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G88A
  • G93A
  • A124G
  • T254A
  • A298G
  • C313T
  • T340C
  • C445T
  • G553A
  • G619A
  • C904T
  • G961A
  • A1213G
  • T1420C
  • C1495T
  • A1555G
  • T1590C
  • A1879G

M segment

  • A1556T
  • A1558G
  • A1561G
  • C1573T
  • C1582A
  • G1588A
  • T1594C
  • T1606C
  • G1617A
  • A1624C
  • A1625C
  • T1633C
  • G1636A
  • T1640C
  • T1645G
  • A1651G
  • A1654G
  • G1659A

S segment

  • G4T
  • T16A
  • C31G
  • C66T
  • A98T
  • G118A
  • C126T
  • C150T
  • G153A
  • T159C
  • T166C
  • A186G
  • A213G
  • C228T
  • G231A
  • G246A
  • A252C
  • C294T
Deletions

S segment

1546-1549, 1600-1602
Insertions

L segment

ins_6460:AAA

S segment

ins_0:GT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:R490W
  • GPC:T513P
  • GPC:G524D
  • GPC:D525G
  • GPC:V561I
  • GPC:S592P
  • GPC:I598T
  • GPC:K601E
  • GPC:K603R
  • GPC:Y606F
  • GPC:V630A
  • GPC:V637I
  • GPC:R688K
  • GPC:F713Y
  • GPC:F718A
  • GPC:L721V
  • GPC:G929R
  • GPC:F970L

NP

  • NP:S109N
  • NP:D116E
  • NP:A124S
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:L821V
  • RdRp:T830H
  • RdRp:S867Y
  • RdRp:T876C
  • RdRp:T900N
  • RdRp:E901Y
  • RdRp:E939A
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:E1452D
  • RdRp:P1660T
  • RdRp:T1675N
Deletions
N/A
Insertions

RdRp

ins_RdRp:2128:K

Report an issue with this sequence or metadata

Create GitHub issue