This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ET7Y.1

Guinea/LOC_001ET7Y.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-11
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
631

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
PV987604.1.L/PV987596.1.M/PV987588.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L segment
636
Total inserted nucs L segment
3
Total unknown nucs L segment
844
Length L segment
11970 (91.9%)
Variant L segment
False
Total SNPs S segment
242
Total inserted nucs S segment
16
Total unknown nucs S segment
25
Length S segment
1673 (90.4%)
Variant S segment
False
Total SNPs M segment
659
Total unknown nucs M segment
224
Length M segment
3815 (65.8%)
Variant M segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G93A
  • A113G
  • G116A
  • G175A
  • G190A
  • C193T
  • C205T
  • G217A
  • C223T
  • A231G
  • C244T
  • T250C
  • T253C
  • T254A
  • G301A
  • C313T
  • G328A
  • T340C

M segment

  • C658T
  • A662G
  • A663C
  • C669T
  • C679T
  • A680G
  • A684C
  • A692T
  • G695A
  • A696G
  • G700A
  • T702C
  • G704A
  • A705T
  • T707C
  • T711C
  • C718G
  • T729C

S segment

  • G4T
  • T16A
  • C31G
  • G34A
  • C66T
  • A83G
  • A84G
  • A98T
  • G107A
  • G118A
  • G120A
  • C126T
  • C138T
  • T139C
  • C150T
  • G153A
  • T159C
  • T166C
Deletions
N/A
Insertions

L segment

ins_6460:AAA

S segment

ins_0:CTCAAGAGAAACAAGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:K192A
  • GPC:S198G
  • GPC:H199P
  • GPC:T202S
  • GPC:E203R
  • GPC:L205P
  • GPC:E206M
  • GPC:S207P
  • GPC:L208S
  • GPC:H210Q
  • GPC:G215N
  • GPC:S216P
  • GPC:M217T
  • GPC:I218T
  • GPC:T221A
  • GPC:T230P
  • GPC:S231P
  • GPC:I232T

NP

  • NP:K15R
  • NP:Y20F
  • NP:G23E
  • NP:V27I
  • NP:Y34H
  • NP:S109N
  • NP:D116E
  • NP:A124S
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A271S
  • NP:N419S
  • NP:R428K
  • NP:T439K
  • NP:N442I
  • NP:Q444K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:A14T
  • RdRp:N52S
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:I223M
  • RdRp:S409G
  • RdRp:N421S
  • RdRp:C422Y
  • RdRp:V444I
  • RdRp:S498N
  • RdRp:S504C
  • RdRp:I505T
  • RdRp:V515I
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
Deletions
N/A
Insertions

RdRp

ins_RdRp:2129:E

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