This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ESUQ.1

France/LOC_001ESUQ.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
ECH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession L segment

Submission details

Submission ID
PV976880.1.L
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L segment
837
Total deleted nucs L segment
1
Total unknown nucs L segment
914
Total frame shifts L segment
1
Frame shifts L segment
RdRp:1028-3946(nt:3157-11914)
Length L segment
11837 (90.2%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • G93A
  • T106C
  • C117T
  • G119C
  • A123G
  • A126G
  • G130C
  • T151C
  • C153G
  • T254A
  • C256T
  • A257C
  • G272A
  • T292C
  • A298G
  • C313T
  • A314G
  • G323A
Deletions

L segment

3156
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:A14V
  • RdRp:G15R
  • RdRp:Q16R
  • RdRp:Y17C
  • RdRp:S26C
  • RdRp:Y60N
  • RdRp:I61L
  • RdRp:E66K
  • RdRp:R80G
  • RdRp:G83S
  • RdRp:L103I
  • RdRp:S106F
  • RdRp:T115A
  • RdRp:I116V
  • RdRp:I118Y
  • RdRp:E128G
  • RdRp:F133L
Deletions
N/A
Insertions
N/A

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