This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ESDM.1

Tajikistan/LOC_001ESDM.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-23
Earliest release date
2025-06-15
Sampling location
Tajikistan
Isolate name
CCHFV_24_179

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-06-15
INSDC accession S segment

Submission details

Submission ID
PV738575.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:32:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
66
Total unknown nucs S segment
11
Length S segment
503 (27.2%)
Variant S segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A840G
  • G848A
  • G849A
  • G852A
  • T858C
  • G863A
  • T864C
  • C882T
  • G885A
  • T891C
  • C909T
  • T912C
  • G915A
  • T918C
  • C930T
  • A939G
  • C960T
  • T981C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:R270K
  • NP:S275N
  • NP:K354R
  • NP:R428K
Deletions
N/A
Insertions
N/A

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