This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ES9V.1

Tajikistan/LOC_001ES9V.1/2023-05-07
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-07
Earliest release date
2025-06-15
Sampling location
Tajikistan
Isolate name
CCHFV_24_24

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-06-15
INSDC accession L segment
INSDC accession S segment

Submission details

Submission ID
PV738567.1.L/PV738566.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:31:29 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
120
Total ambiguous nucs S segment
5
Length S segment
926 (51%)
Variant S segment
False
Total SNPs L segment
998
Total ambiguous nucs L segment
21
Total unknown nucs L segment
3640
Length L segment
11435 (64.2%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • T466C
  • G472A
  • C475T
  • G490A
  • T493C
  • G502A
  • T508A
  • A526G
  • T535C
  • G538T
  • C541T
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G
  • G578A
  • G583A

S segment

  • A423G
  • C429T
  • T430C
  • G432C
  • A435G
  • C471T
  • A474G
  • G477A
  • T480C
  • C481T
  • G483A
  • A487C
  • T513C
  • C519T
  • G522A
  • G543A
  • C555T
  • C562A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:G259E
  • NP:R270K
  • NP:S275N
  • NP:N419S
  • NP:R428K

RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:V407A
  • RdRp:T481A
  • RdRp:K486R
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508I
  • RdRp:V515I
  • RdRp:K940R
Deletions
N/A
Insertions
N/A

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