This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ERHD.1

Tajikistan/LOC_001ERHD.1/2023-05-26
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-26
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_4_159

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:26insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-05
INSDC accession S segment

Submission details

Submission ID
PV390609.1.S
Submitting group
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:31:29 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S segment
114
Total ambiguous nucs S segment
5
Length S segment
919 (50.6%)
Variant S segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A423G
  • C429T
  • T430C
  • A435G
  • C462T
  • C471T
  • A474G
  • G477A
  • T480C
  • C481T
  • G483A
  • A487C
  • C498T
  • G504A
  • T513C
  • C519T
  • G522A
  • G543A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K
Deletions
N/A
Insertions
N/A

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