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LOC_001ERGG.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_001ERGG.1/2023-04-28
M. A. Kuskucu,
D. Yapar,
S. Yalcin,
A. Celikbas,
N. Baykam,
F. Can &
O. Ergonul
Koc University, Medical Microbiology, KUISCID
Sample details
Collection date
2023-04-28
Earliest release date
2025-04-01
Sampling location
Turkey
Isolate name
VK4_KUISCID
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-01
INSDC accession L segment
PV330319.1
INSDC accession M segment
PV330318.1
INSDC accession S segment
PV330317.1
Submission details
Submission ID
PV330319.1.L/PV330318.1.M/PV330317.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:31:29 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_001ERGG.1.embl
Alignment and QC
Total SNPs M segment
1033
Total inserted nucs M segment
5
Total deleted nucs M segment
3
Total ambiguous nucs M segment
3
Length M segment
5357 (98.1%)
Variant M segment
False
Total SNPs S segment
246
Total inserted nucs S segment
1
Total deleted nucs S segment
5
Total ambiguous nucs S segment
1
Length S segment
1648 (91.4%)
Variant S segment
False
Total SNPs L segment
1325
Total inserted nucs L segment
2
Total ambiguous nucs L segment
7
Length L segment
12070 (99.6%)
Variant L segment
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
42
T
G
43
C
T
49
C
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
C
A
91
G
G
93
A
C
100
T
A
109
G
T
131
A
C
133
T
T
139
C
Show more
M segment
T
36
A
G
46
A
A
47
G
T
63
C
T
67
A
G
72
C
A
76
G
T
78
C
T
79
C
G
80
A
T
81
C
C
88
T
T
96
C
T
98
C
C
99
T
G
103
A
A
104
G
T
109
C
Show more
S segment
T
16
A
C
31
G
T
33
C
G
34
T
A
51
G
T
63
C
A
65
G
A
93
G
A
98
T
C
99
T
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
Show more
Deletions
M segment
326-328
S segment
1599-1603
Insertions
L segment
ins_67:C, ins_11924:G
M segment
ins_0:TCTC, ins_5167:T
S segment
ins_0:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
L
GPC:
G
26
T
GPC:
N
31
G
GPC:
H
33
N
GPC:
V
34
N
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
L
343
M
RdRp:
V
352
I
RdRp:
N
453
S
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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