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LOC_001EL83.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_001EL83.1/2023-08-30
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-08-30
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-21/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-21 21:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
INSDC accession L segment
OR964927.1
INSDC accession M segment
OR964938.1
INSDC accession S segment
OR964916.1
Submission details
Submission ID
OR964927.1.L/OR964938.1.M/OR964916.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-21 21:26:45 UTC
Date released
2026-03-21 21:31:29 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_001EL83.1.embl
Alignment and QC
Total SNPs L segment
1220
Total inserted nucs L segment
49
Total deleted nucs L segment
1
Total unknown nucs L segment
814
Length L segment
12146 (93.2%)
Variant L segment
False
Total SNPs M segment
44
Total inserted nucs M segment
2
Total deleted nucs M segment
29
Total unknown nucs M segment
158
Total frame shifts M segment
1
Frame shifts M segment
GPC:420-1685(nt:1345-5143)
Length M segment
5364 (95.9%)
Variant M segment
False
Total SNPs S segment
168
Total unknown nucs S segment
96
Length S segment
1648 (85.9%)
Variant S segment
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
T
139
C
T
154
C
T
160
C
C
208
T
T
250
C
Show more
M segment
G
65
A
C
375
T
G
394
A
A
416
G
T
424
C
G
480
A
T
518
C
G
529
A
T
584
C
C
616
T
A
626
G
G
634
A
A
640
G
C
649
A
C
718
A
C
720
T
T
729
C
T
738
C
Show more
S segment
T
16
A
C
31
G
T
63
C
A
84
G
A
93
G
A
98
T
A
102
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
A
186
G
C
192
T
C
201
T
G
231
A
A
252
C
Show more
Deletions
L segment
12034
M segment
5348-5376
Insertions
L segment
ins_58:T, ins_11925:GT, ins_12055:ACAATTTC, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGAT
M segment
ins_1344:A, ins_5215:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
96
L
GPC:
T
110
A
GPC:
S
131
N
GPC:
Y
144
H
GPC:
S
166
P
GPC:
T
180
A
GPC:
H
210
Q
GPC:
S
211
L
GPC:
L
214
S
GPC:
M
217
T
GPC:
T
348
A
NP
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
A
307
V
NP:
Q
405
L
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
G
762
E
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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