This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019WBX.1

Display Name: France/LOC_0019WBX.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
3445

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1531
Total SNPs S
115
Total inserted nucs S
16
Total deleted nucs S
24
Total ambiguous nucs S
0
Total unknown nucs S
627
Total frame shifts S
3
Frame shifts S
NP:31-93(nt:130-318),NP:172-230(nt:552-728),NP:252-483(nt:792-1488)
Completeness S
50.50%
Stop codons S
NP:135,NP:156
Total stop codons S
2

Submission details

Submission ID
PV976886.1.S
Submitting group
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:C150T
  • S:A162C
  • S:C171T
  • S:A193G
  • S:T204C
  • S:T207C
  • S:A213G
  • S:C225T
  • S:A227C
  • S:C228A
  • S:G229T
  • S:C230G
  • S:G231T
  • S:T234C
  • S:G246A
  • S:T258C
  • S:T259G
  • S:G260T
    • Deletions
    S:467-469, S:541-551, S:649, S:729, S:787-791, S:841, S:842, S:1562
    Insertions
    ins_S:129:C, ins_S:231:CGC, ins_S:318:CC, ins_S:567:CATGGTCGCT

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:L26D
  • NP:V27T
  • NP:D28F
  • NP:E94K
  • NP:W95R
  • NP:K135*
  • NP:A143D
  • NP:Y156*
  • NP:E161D
  • NP:K237S
  • NP:A239Q
  • NP:E240G
  • NP:T241D
  • NP:E242R
  • NP:G243R
  • NP:G245V
  • NP:V246L
    • Deletions
    NP:144, NP:168-171, NP:250, NP:251
    Insertions
    None

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