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LOC_0019W91.1
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Display Name: France/LOC_0019W91.1/2024
M. Gasparine &
A. Falchi
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
590
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Corsica, Unite des Virus Emergents
INSDC
NCBI release date
2025-08-10
INSDC accession M
PV976884.1
INSDC accession S
PV976887.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics S
Length S
1673
Total SNPs S
93
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0
Alignment and QC metrics M
Length M
5206
Total SNPs M
562
Total inserted nucs M
19
Total deleted nucs M
14
Total ambiguous nucs M
0
Total unknown nucs M
3191
Total frame shifts M
8
Frame shifts M
GPC:49-84(nt:221-328),GPC:95-124(nt:359-448),GPC:336-343(nt:1082-1105),GPC:367-541(nt:1173-1698),GPC:558-576(nt:1747-1804),GPC:1099-1163(nt:3370-3565),GPC:1180-1672(nt:3612-5092),GPC:1683-1701(nt:5123-5179)
Completeness M
37.22%
Stop codons M
GPC:48
Total stop codons M
1
Submission details
Submission ID
PV976884.1.M/PV976887.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019W91.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
M
M:
C
3
T
M:
A
5
T
M:
G
6
C
M:
C
7
A
M:
G
8
A
M:
C
9
A
M:
C
10
G
M:
G
11
A
M:
C
15
A
M:
C
17
T
M:
C
18
T
M:
C
21
G
M:
G
24
A
M:
G
29
A
M:
C
30
G
M:
G
31
T
M:
G
32
A
M:
G
36
A
Show more
S
S:
G
4
T
S:
T
16
A
S:
C
31
G
S:
A
84
G
S:
A
98
T
S:
A
108
G
S:
C
150
T
S:
A
193
G
S:
A
213
G
S:
C
225
T
S:
C
228
T
S:
A
311
G
S:
G
330
A
S:
A
333
G
S:
T
372
C
S:
T
384
C
S:
T
387
C
S:
A
393
G
Show more
Deletions
M:329, M:330, M:358, M:1171, M:1172, M:1550, M:1699, M:1745, M:1746, M:1805, M:3566, M:3567, M:3611, M:3709
Insertions
ins_M:75:GAA, ins_M:220:TA, ins_M:448:T, ins_M:1081:G, ins_M:1105:TT, ins_M:1330:C, ins_M:3369:C, ins_M:3415:T, ins_M:5092:AAAAA, ins_M:5122:A, ins_M:5137:A, ins_S:0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
L
2
F
GPC:
F
3
L
GPC:
E
6
K
GPC:
H
7
F
GPC:
I
11
T
GPC:
V
14
F
GPC:
I
18
L
GPC:
L
19
Y
GPC:
W
20
G
GPC:
S
21
V
GPC:
G
22
A
GPC:
G
23
A
GPC:
A
26
P
GPC:
D
27
V
GPC:
A
29
S
GPC:
S
33
T
GPC:
M
35
S
GPC:
G
38
A
Show more
NP
NP:
Y
20
F
NP:
S
52
G
NP:
K
91
R
NP:
V
246
I
Deletions
GPC:85, GPC:366, GPC:557, GPC:577, GPC:1164, GPC:1179
Insertions
ins_GPC:344:N, ins_GPC:1671:X
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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