This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019W83.1

Display Name: France/LOC_0019W83.1/2024
M. Gasparine & A. Falchi

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
1002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Corsica, Unite des Virus Emergents

INSDC

NCBI release date
2025-08-10
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
1672
Total SNPs S
128
Total inserted nucs S
16
Total deleted nucs S
1
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0

Alignment and QC metrics M

Length M
5413
Total SNPs M
1126
Total inserted nucs M
54
Total deleted nucs M
16
Total ambiguous nucs M
0
Total unknown nucs M
1081
Total frame shifts M
13
Frame shifts M
GPC:233-305(nt:771-989),GPC:324-629(nt:1046-1963),GPC:635-663(nt:1979-2063),GPC:682-729(nt:2120-2263),GPC:1109-1260(nt:3401-3856),GPC:1319-1364(nt:4029-4168),GPC:1381-1402(nt:4215-4282),GPC:1411-1427(nt:4307-4356),GPC:1450-1467(nt:4424-4475),GPC:1482-1502(nt:4518-4580),GPC:1515-1529(nt:4618-4662),GPC:1545-1564(nt:4709-4767),GPC:1677-1701(nt:5103-5179)
Completeness M
79.50%
Total stop codons M
0

Submission details

Submission ID
PV976883.1.M/PV976892.1.S
Submitting group
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

M

  • M:C3T
  • M:A5T
  • M:G6C
  • M:C7A
  • M:G8A
  • M:C9A
  • M:C10G
  • M:G11A
  • M:C15A
  • M:C17T
  • M:C18T
  • M:C21G
  • M:G24A
  • M:G29A
  • M:C30G
  • M:G31T
  • M:G32A
  • M:G36A

    • S

  • S:T16A
  • S:C31G
  • S:G34A
  • S:A38G
  • S:A51G
  • S:A83G
  • S:A84G
  • S:A98T
  • S:A162C
  • S:A173G
  • S:C183T
  • S:A186G
  • S:A213G
  • S:T219C
  • S:G231A
  • S:A255G
  • S:T279C
  • S:G282A
    • Deletions
    M:770, M:1045, M:2264, M:4028, M:4114-4116, M:4214, M:4517, M:5102, M:5213-5217, M:5245, S:1562
    Insertions
    ins_M:39:GTT, ins_M:989:A, ins_M:1934:TT, ins_M:1963:AA, ins_M:1978:G, ins_M:2038:A, ins_M:2063:C, ins_M:2119:G, ins_M:3400:AG, ins_M:3856:G, ins_M:4168:A, ins_M:4282:C, ins_M:4306:C, ins_M:4342:A, ins_M:4356:C, ins_M:4423:A, ins_M:4475:TCATG, ins_M:4561:TG, ins_M:4580:GA, ins_M:4617:G, ins_M:4662:CC, ins_M:4708:G, ins_M:4735:G, ins_M:4767:A, ins_M:4858:GAG, ins_M:5260:CCAACTATTGCACCT,...

    Amino acid mutations

    Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

    Substitutions

    GPC

  • GPC:L2F
  • GPC:F3L
  • GPC:E6K
  • GPC:H7F
  • GPC:I11T
  • GPC:V14F
  • GPC:I18L
  • GPC:S21G
  • GPC:L25V
  • GPC:D27S
  • GPC:E28G
  • GPC:A29G
  • GPC:S33T
  • GPC:M35S
  • GPC:G38T
  • GPC:A39T
  • GPC:T40L
  • GPC:A41M

    • NP

  • NP:K15R
  • NP:Y20F
  • NP:K45R
  • NP:A124T
  • NP:N125G
  • NP:Q179L
  • NP:R195H
  • NP:V246I
  • NP:G301S
  • NP:R428K
  • NP:I436V
    • Deletions
    GPC:232, GPC:730, GPC:1318, GPC:1380, GPC:1481, GPC:1676
    Insertions
    ins_GPC:633:HV, ins_GPC:1260:X, ins_GPC:1472:LN, ins_GPC:1502:N, ins_GPC:1530:Q, ins_GPC:1564:X, ins_GPC:1597:F

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