This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019W59.1

Display Name: Viet_Nam/LOC_0019W59.1/2015
N. Le Nguyen Truc, A. Nguyen To, N. Le Nguyen Thanh, H. Nguyen Thi Thu, V. Hoang Minh Tu, T. Tran Tan, H. Vu Thi Ty, H. Do Duong Kim, N. Nguyen Thi Han, N. Lam Anh, Q. Du Tuan, Q. Phan Tu, K. Truong Huu, H. Nguyen Thanh, T. Ha Manh, C. Nguyen Van Vinh, G. Thwaites, R. van Doorn & T. Le Van

Sample details

Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Earliest release date
2021-06-28
Collection country
Viet Nam
Isolate name
03EI-01-1-352

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:31insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Oxford University Clinical Research Unit, Emerging Infections

INSDC

NCBI release date
2021-06-28
NCBI update date
2021-06-28
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
6338
Total SNPs
1422
Total inserted nucs
0
Total deleted nucs
2
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
85.53%
Total stop codons
0

Submission details

Submission ID
MW999281.1
Submitting group
Date submitted
2026-02-06 07:30:35 UTC
Date released
2026-02-06 07:43:47 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A665G
  • A673G
  • G682A
  • T685C
  • A686G
  • A688C
  • A691T
  • C696A
  • A697T
  • C699T
  • A705G
  • A706G
  • A707T
  • C709A
  • C710T
  • C712T
  • G713A
  • C715A
    • Deletions
    702, 703
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    2A

  • 2A:R68K
  • 2A:S77T
  • 2A:V121I

    • 2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

    • 2C

  • 2C:N23S
  • 2C:I228V
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

    • 3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V

    • 3B

  • 3B:T10A
  • 3B:I15V

    • 3C

  • 3C:V36I
  • 3C:I56V
  • 3C:I86V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:V157I
  • 3C:S177G

    • 3D

  • 3D:V6M
  • 3D:I17V
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106Y
  • 3D:T134V
  • 3D:V138T
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T
  • 3D:I205V

    • VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K

    • VP2

  • VP2:I32V
  • VP2:K43P
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:A226T
  • VP2:I252V

    • VP3

  • VP3:A33P
  • VP3:R41H
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141N
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
    • Deletions
    None
    Insertions
    None

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