This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0019W4B.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_0019W4B.1/2024
M. Gasparine &
A. Falchi
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
3154
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Corsica, Unite des Virus Emergents
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976879.1
INSDC accession M
PV976878.1
INSDC accession S
PV976895.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
12157
Total SNPs L
290
Total inserted nucs L
52
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.98%
Total stop codons L
0
Alignment and QC metrics M
Length M
5366
Total SNPs M
708
Total inserted nucs M
4
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.26%
Total stop codons M
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
45
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0
Submission details
Submission ID
PV976879.1.L/PV976878.1.M/PV976895.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019W4B.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
C
64
T
L:
T
65
C
L:
T
70
C
L:
G
93
A
L:
C
100
T
L:
T
151
C
L:
T
160
C
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
C
427
T
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
C
568
T
L:
G
619
A
L:
A
677
G
Show more
M
M:
G
65
A
M:
T
81
C
M:
C
82
T
M:
G
103
A
M:
G
113
A
M:
T
115
C
M:
T
116
C
M:
C
118
T
M:
G
120
A
M:
T
122
C
M:
G
124
A
M:
A
127
G
M:
A
139
G
M:
G
142
A
M:
A
143
G
M:
A
149
C
M:
C
151
T
M:
C
155
T
Show more
S
S:
T
16
A
S:
A
98
T
S:
A
162
G
S:
T
165
C
S:
C
171
T
S:
T
204
C
S:
T
258
C
S:
A
311
G
S:
G
339
A
S:
A
396
G
S:
C
471
T
S:
A
474
G
S:
G
477
A
S:
C
636
T
S:
G
765
A
S:
G
822
A
S:
C
846
T
S:
A
847
G
Show more
Deletions
None
Insertions
ins_L:12097:CTCATTTCAGCTTCATCGTCATCGTTATTATTTTGGGGTGTGGGGGGAACGA, ins_M:0:TCTC, ins_S:0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
I
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
S
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
46
Q
GPC:
P
53
S
GPC:
V
54
I
Show more
NP
NP:
Y
20
F
NP:
K
91
R
NP:
R
270
G
NP:
T
429
I
NP:
S
451
P
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
S
201
G
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
R
1126
H
RdRp:
T
1182
I
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1496
I
RdRp:
M
1647
L
RdRp:
P
1660
T
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue