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LOC_0019W3D.1
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Download FASTA
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Display Name: France/LOC_0019W3D.1/2024
M. Gasparine &
A. Falchi
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-08-10
Collection country
France
Isolate name
2456
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Corsica, Unite des Virus Emergents
INSDC
NCBI release date
2025-08-10
INSDC accession M
PV976877.1
INSDC accession S
PV976894.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics M
Length M
5366
Total SNPs M
714
Total inserted nucs M
4
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.26%
Total stop codons M
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
42
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.75%
Total stop codons S
0
Submission details
Submission ID
PV976877.1.M/PV976894.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019W3D.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
M
M:
G
65
A
M:
T
81
C
M:
C
82
T
M:
G
103
A
M:
G
113
A
M:
T
115
C
M:
T
116
C
M:
C
118
T
M:
G
120
A
M:
T
122
C
M:
G
124
A
M:
A
127
G
M:
A
139
G
M:
G
142
A
M:
A
143
G
M:
A
149
C
M:
C
151
T
M:
C
155
T
Show more
S
S:
G
4
T
S:
T
16
A
S:
A
98
T
S:
A
162
G
S:
T
165
C
S:
T
204
C
S:
T
258
C
S:
A
311
G
S:
G
330
A
S:
G
339
A
S:
A
396
G
S:
C
471
T
S:
A
474
G
S:
G
477
A
S:
C
636
T
S:
G
765
A
S:
G
822
A
S:
G
852
A
Show more
Deletions
None
Insertions
ins_M:0:TCTC, ins_S:0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
I
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
S
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
46
Q
GPC:
P
53
S
GPC:
V
54
I
Show more
NP
NP:
Y
20
F
NP:
K
91
R
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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