This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019W3D.1

USA/LOC_0019W3D.1/2008-01-01
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2008
Earliest release date
2018-11-19
Sampling location
USA (CO, Scarborough Forth Collins)
Isolate name
CO 08-13410

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH170255.1
Submitting group
Date submitted
2026-10-05 17:01:15 UTC
Date released
2026-10-05 17:13:14 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
11018 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:D326N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • capsid:V121A
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G19A
  • G46A
  • A71G
  • C381T
  • T458C
  • A630G
  • C660T
  • T1442C
  • C1465T
  • T1821C
  • T2029C
  • C2040T
  • A2184G
  • C2370T
  • C2466T
  • G2505A
  • A2523T
  • T2772A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:D326N

NS4B

  • NS4B:I240M

capsid

  • capsid:V121A

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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