This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019VTZ.1

Display Name: Tunisia/LOC_0019VTZ.1/2024
S. Fabi, G. Di Pietra, E. Valente, M. Bellato, C. Agostini, M. Paccagnella, E. Franchin, V. Chisu, C. Foxi, C. Del Vecchio, I. Castagliuolo, G. Masala & C. Salata

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-07-23
Collection country
Tunisia
Isolate name
CCHFV/TUN/KOS/2024/22B

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Padova, Molecular Medicine

INSDC

NCBI release date
2025-07-23
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma sp.

Alignment and QC metrics S

Length S
666
Total SNPs S
114
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
39.64%
Total stop codons S
0

Submission details

Submission ID
PV920626.1.S
Submitting group
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MK299338.1 references

Substitutions

S

  • S:G765A
  • S:G768T
  • S:G771A
  • S:G774A
  • S:T777A
  • S:A780G
  • S:T783G
  • S:T813G
  • S:G819A
  • S:A822C
  • S:T831G
  • S:T837C
  • S:T840C
  • S:G848A
  • S:A855G
  • S:C858A
  • S:T861C
  • S:A867C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & MK299338.1 references

    Substitutions

    NP

  • NP:D259E
  • NP:R265K
  • NP:N275S
  • NP:S279N
  • NP:A285T
  • NP:D401V
  • NP:T420S
  • NP:S422T
  • NP:R428K
  • NP:I436V
  • NP:D442N
  • NP:K444Q
  • NP:L454V
    • Deletions
    None
    Insertions
    None

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