This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019VQ5.1

Display Name: Tajikistan/LOC_0019VQ5.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_24_179

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-06-15
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
503
Total SNPs S
66
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
11
Total frame shifts S
0
Completeness S
27.24%
Total stop codons S
0

Submission details

Submission ID
PV738575.1.S
Submitting group
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:A840G
  • S:G848A
  • S:G849A
  • S:G852A
  • S:T858C
  • S:G863A
  • S:T864C
  • S:C882T
  • S:G885A
  • S:T891C
  • S:C909T
  • S:T912C
  • S:G915A
  • S:T918C
  • S:C930T
  • S:A939G
  • S:C960T
  • S:T981C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:R270K
  • NP:S275N
  • NP:K354R
  • NP:R428K
    • Deletions
    None
    Insertions
    None

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