This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0019VN9.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_0019VN9.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_27_27
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-06-15
INSDC accession L
PV738571.1
INSDC accession S
PV738570.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11876
Total SNPs L
1249
Total inserted nucs L
2
Total deleted nucs L
0
Total ambiguous nucs L
25
Total unknown nucs L
2232
Total frame shifts L
0
Completeness L
79.43%
Total stop codons L
0
Alignment and QC metrics S
Length S
1249
Total SNPs S
181
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
5
Total unknown nucs S
9
Total frame shifts S
0
Completeness S
68.38%
Total stop codons S
0
Submission details
Submission ID
PV738571.1.L/PV738570.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019VN9.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
A
53
G
L:
C
59
T
L:
T
62
C
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
C
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
Show more
S
S:
A
423
G
S:
C
429
T
S:
T
430
C
S:
G
432
C
S:
A
435
G
S:
C
456
T
S:
C
471
T
S:
A
474
G
S:
G
477
A
S:
T
480
C
S:
C
481
T
S:
G
483
A
S:
A
487
C
S:
T
513
C
S:
C
519
T
S:
G
522
A
S:
G
543
A
S:
C
555
T
Show more
Deletions
None
Insertions
ins_L:67:CT
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
G
259
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
S
124
C
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue