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LOC_0019VMB.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_0019VMB.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_26_26
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-06-15
INSDC accession L
PV738569.1
INSDC accession S
PV738568.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11699
Total SNPs L
1247
Total inserted nucs L
29
Total deleted nucs L
1
Total ambiguous nucs L
25
Total unknown nucs L
2542
Total frame shifts L
0
Completeness L
75.19%
Total stop codons L
0
Alignment and QC metrics S
Length S
1246
Total SNPs S
176
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
9
Total unknown nucs S
8
Total frame shifts S
0
Completeness S
68.05%
Total stop codons S
0
Submission details
Submission ID
PV738569.1.L/PV738568.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019VMB.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L
L:
T
466
C
L:
G
472
A
L:
C
475
T
L:
G
490
A
L:
T
493
C
L:
G
502
A
L:
T
508
A
L:
A
526
G
L:
C
529
T
L:
T
535
C
L:
G
538
T
L:
C
541
T
L:
A
547
G
L:
T
550
G
L:
G
553
A
L:
A
563
G
L:
A
565
T
L:
A
571
G
Show more
S
S:
A
402
G
S:
A
405
G
S:
A
423
G
S:
C
429
T
S:
T
430
C
S:
G
432
C
S:
A
435
G
S:
A
441
G
S:
C
456
T
S:
C
471
T
S:
A
474
G
S:
G
477
A
S:
T
480
C
S:
C
481
T
S:
G
483
A
S:
A
487
C
S:
T
513
C
S:
C
519
T
Show more
Deletions
L:12000
Insertions
ins_L:11922:TC, ins_L:12108:CACCGTTCATTTCAGTTTGATTATTTC
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
150
H
NP:
Q
179
L
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
S
409
G
RdRp:
T
481
A
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
R
751
H
RdRp:
R
764
K
Show more
Deletions
None
Insertions
None
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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