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LOC_0019V4C.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_0019V4C.1/2023-05-26
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-26
Collection date (lower bound)
2023-05-26
Collection date (upper bound)
2023-05-26
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_6_161
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-04-05
INSDC accession L
PV390627.1
INSDC accession S
PV390610.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
12131
Total SNPs L
1606
Total inserted nucs L
47
Total deleted nucs L
1
Total ambiguous nucs L
36
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.51%
Total stop codons L
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
224
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
12
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.09%
Total stop codons S
0
Submission details
Submission ID
PV390627.1.L/PV390610.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019V4C.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
G
130
T
L:
T
131
A
L:
C
136
T
L:
T
151
C
Show more
S
S:
C
9
T
S:
T
16
A
S:
C
31
G
S:
G
34
A
S:
A
45
G
S:
C
48
T
S:
T
63
C
S:
A
84
G
S:
A
98
T
S:
A
102
G
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
T
166
C
S:
C
171
T
S:
A
173
G
S:
G
174
A
S:
G
180
A
Show more
Deletions
L:11996
Insertions
ins_L:66:CC, ins_L:11927:GT, ins_L:12045:CTATTTTAGTGCAATTCTTTCTACCATTAGT, ins_L:12108:GTGKGGGGAGAA, ins_S:0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
V
RdRp:
M
112
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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