This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0019UYQ.1
Download
Download FASTA
Download metadata TSV
Display Name: China/LOC_0019UYQ.1/2019-06
J. Wang,
J. Liu,
F. Fang,
J. Wu,
T. Ji,
Y. Yang,
L. Liu,
C. Li,
W. Zhang,
X. Zhang,
Z. Teng &
Y. Zhou
Sample details
Collection date
2019-06
Collection date (lower bound)
2019-06-01
Collection date (upper bound)
2019-06-30
Earliest release date
2022-06-18
Collection country
China
Isolate name
HP19-22
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-06 07:31
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Shanghai CDC, Microbiology Lab
INSDC
NCBI release date
2022-06-18
NCBI update date
2022-06-18
INSDC accession
MW929258.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7412
Total SNPs
1504
Total inserted nucs
7
Total deleted nucs
4
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0
Submission details
Submission ID
MW929258.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-06 07:30:35 UTC
Date released
2026-02-06 07:43:47 UTC
Clade
Clade CV-A10
C
Genotype
Genotype
CV-A10
Nucleotide mutations
Mutations called relative to the
AY421767.1
reference
Substitutions
C
21
T
T
28
C
G
58
A
A
60
T
C
62
T
T
64
C
T
67
A
C
69
T
C
90
A
T
96
C
T
102
A
A
106
T
C
108
A
A
109
C
A
118
T
C
120
T
C
122
T
C
125
G
Show more
Deletions
94, 308-310
Insertions
ins_0:T, ins_102:AAC, ins_127:ACT
Amino acid mutations
Mutations called relative to the
AY421767.1
reference
Substitutions
2A
2A:
V
29
A
2A:
N
57
E
2A:
R
68
K
2A:
I
82
V
2A:
E
102
A
2A:
L
123
I
2B
2B:
N
30
S
2B:
H
31
Y
2B:
S
85
A
2B:
S
94
P
2C
2C:
N
9
S
2C:
I
21
V
2C:
L
56
M
2C:
S
61
A
2C:
A
75
V
2C:
I
76
M
2C:
V
108
M
2C:
Y
243
F
2C:
K
293
R
2C:
M
306
V
2C:
I
311
V
2C:
N
315
S
2C:
V
320
I
3A
3A:
I
8
V
3A:
E
13
D
3A:
T
17
A
3A:
E
39
D
3C
3C:
I
15
V
3C:
Q
17
R
3C:
A
18
V
3C:
I
30
V
3C:
R
33
H
3C:
I
49
V
3C:
N
55
S
3C:
I
86
V
3C:
T
93
N
3C:
A
95
S
3C:
V
103
I
3C:
I
116
V
3D
3D:
M
6
V
3D:
N
16
S
3D:
N
32
D
3D:
V
33
L
3D:
T
66
V
3D:
T
75
K
3D:
S
93
N
3D:
V
134
T
3D:
T
138
I
3D:
S
139
T
3D:
L
143
F
3D:
S
164
P
3D:
V
197
A
3D:
I
205
V
3D:
S
236
G
3D:
L
251
M
3D:
E
255
D
3D:
K
315
R
Show more
VP1
VP1:
S
13
G
VP1:
S
14
N
VP1:
V
16
A
VP1:
T
21
S
VP1:
G
23
V
VP1:
Q
24
T
VP1:
D
25
N
VP1:
N
27
E
VP1:
T
28
S
VP1:
G
31
N
VP1:
A
33
T
VP1:
M
70
V
VP1:
A
78
T
VP1:
S
81
N
VP1:
V
107
T
VP1:
F
148
Y
VP1:
Q
223
L
VP1:
V
240
E
Show more
VP2
VP2:
L
132
I
VP2:
N
150
T
VP2:
A
157
T
VP2:
S
160
T
VP2:
N
162
H
VP2:
S
176
A
VP2:
I
194
V
VP2:
V
218
I
VP2:
V
237
I
VP3
VP3:
L
2
I
VP3:
T
4
A
VP3:
E
17
D
VP3:
S
29
T
VP3:
S
33
T
VP3:
R
41
H
VP3:
D
60
E
VP3:
N
65
T
VP3:
A
73
S
VP3:
I
131
V
VP4
VP4:
S
7
T
VP4:
R
9
K
VP4:
S
42
T
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue