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LOC_0019UXS.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_0019UXS.1/2023-05-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_23_178
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-04-05
INSDC accession M
PV390620.1
INSDC accession S
PV390613.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics M
Length M
3673
Total SNPs M
331
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
17
Total unknown nucs M
1647
Total frame shifts M
0
Completeness M
36.80%
Total stop codons M
0
Alignment and QC metrics S
Length S
919
Total SNPs S
126
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
1
Total unknown nucs S
1
Total frame shifts S
0
Completeness S
50.78%
Total stop codons S
0
Submission details
Submission ID
PV390620.1.M/PV390613.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019UXS.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
M
M:
T
1663
C
M:
A
1675
G
M:
A
1678
G
M:
C
1688
T
M:
A
1705
G
M:
G
1708
A
M:
G
1709
A
M:
C
1711
T
M:
T
1714
C
M:
G
1715
A
M:
C
1717
T
M:
T
1741
C
M:
G
1744
A
M:
A
1774
G
M:
A
1780
G
M:
C
1784
T
M:
G
1786
A
M:
T
1789
C
Show more
S
S:
A
423
G
S:
C
429
T
S:
T
430
C
S:
G
432
C
S:
A
435
G
S:
C
462
T
S:
C
471
T
S:
A
474
G
S:
G
477
A
S:
T
480
C
S:
C
481
T
S:
G
483
A
S:
A
487
C
S:
C
489
T
S:
A
492
G
S:
C
498
T
S:
G
504
A
S:
T
513
C
Show more
Deletions
None
Insertions
ins_M:5165:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
541
I
GPC:
G
543
S
GPC:
R
579
K
GPC:
I
598
T
GPC:
K
603
R
GPC:
Y
606
F
GPC:
V
630
A
GPC:
V
637
I
GPC:
V
663
I
GPC:
K
669
N
GPC:
R
688
K
GPC:
A
710
V
GPC:
F
713
Y
GPC:
I
717
V
GPC:
F
718
V
GPC:
R
724
K
GPC:
T
778
M
GPC:
R
782
K
Show more
NP
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
V
205
I
NP:
L
235
F
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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