This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019UUY.1

Display Name: Tajikistan/LOC_0019UUY.1/2023-05-26
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-26
Collection date (lower bound)
2023-05-26
Collection date (upper bound)
2023-05-26
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_4_159

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-30 16:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-04-05
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics S

Length S
919
Total SNPs S
114
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
5
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
50.61%
Total stop codons S
0

Submission details

Submission ID
PV390609.1.S
Submitting group
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:A423G
  • S:C429T
  • S:T430C
  • S:A435G
  • S:C462T
  • S:C471T
  • S:A474G
  • S:G477A
  • S:T480C
  • S:C481T
  • S:G483A
  • S:A487C
  • S:C498T
  • S:G504A
  • S:T513C
  • S:C519T
  • S:G522A
  • S:G543A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K
    • Deletions
    None
    Insertions
    None

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