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LOC_0019UT0.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/LOC_0019UT0.1/2023-04-28
M. A. Kuskucu,
D. Yapar,
S. Yalcin,
A. Celikbas,
N. Baykam,
F. Can &
O. Ergonul
Sample details
Collection date
2023-04-28
Collection date (lower bound)
2023-04-28
Collection date (upper bound)
2023-04-28
Earliest release date
2025-04-01
Collection country
Turkey
Isolate name
VK4_KUISCID
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Koc University, Medical Microbiology, KUISCID
INSDC
NCBI release date
2025-04-01
INSDC accession L
PV330319.1
INSDC accession M
PV330318.1
INSDC accession S
PV330317.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12070
Total SNPs L
1325
Total inserted nucs L
2
Total deleted nucs L
0
Total ambiguous nucs L
7
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.61%
Total stop codons L
0
Alignment and QC metrics M
Length M
5357
Total SNPs M
1033
Total inserted nucs M
5
Total deleted nucs M
3
Total ambiguous nucs M
3
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.08%
Total stop codons M
0
Alignment and QC metrics S
Length S
1648
Total SNPs S
246
Total inserted nucs S
1
Total deleted nucs S
5
Total ambiguous nucs S
1
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.42%
Total stop codons S
0
Submission details
Submission ID
PV330319.1.L/PV330318.1.M/PV330317.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019UT0.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
A
42
T
L:
G
43
C
L:
T
49
C
L:
A
53
G
L:
T
58
C
L:
C
59
T
L:
C
63
T
L:
C
64
G
L:
T
66
C
L:
A
72
G
L:
A
73
C
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
L:
C
133
T
L:
T
139
C
Show more
M
M:
T
36
A
M:
G
46
A
M:
A
47
G
M:
T
63
C
M:
T
67
A
M:
G
72
C
M:
A
76
G
M:
T
78
C
M:
T
79
C
M:
G
80
A
M:
T
81
C
M:
C
88
T
M:
T
96
C
M:
T
98
C
M:
C
99
T
M:
G
103
A
M:
A
104
G
M:
T
109
C
Show more
S
S:
T
16
A
S:
C
31
G
S:
T
33
C
S:
G
34
T
S:
A
51
G
S:
T
63
C
S:
A
65
G
S:
A
93
G
S:
A
98
T
S:
C
99
T
S:
G
118
A
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
G
155
A
S:
T
159
A
S:
T
166
C
S:
C
171
T
Show more
Deletions
M:326-328, S:1599-1603
Insertions
ins_L:67:C, ins_L:11924:G, ins_M:0:TCTC, ins_M:5167:T, ins_S:0:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
L
GPC:
G
26
T
GPC:
N
31
G
GPC:
H
33
N
GPC:
V
34
N
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
L
343
M
RdRp:
V
352
I
RdRp:
N
453
S
Show more
Deletions
GPC:77
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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