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LOC_0019T4E.1
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Download FASTA
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Display Name: Pakistan/LOC_0019T4E.1/2024-01-01
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
Sample details
Collection date
2024-01-01
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-01-01
Earliest release date
2024-11-12
Collection country
Pakistan
Collection subdivision level 1
Sindh
Isolate name
CCHF/NIHPAK-1/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523730.1
INSDC accession S
PQ523723.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
11906
Total SNPs L
1565
Total inserted nucs L
1
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
98.32%
Total stop codons L
0
Alignment and QC metrics S
Length S
1629
Total SNPs S
226
Total inserted nucs S
0
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
90.31%
Total stop codons S
0
Submission details
Submission ID
PQ523730.1.L/PQ523723.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019T4E.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
A
124
G
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
Show more
S
S:
T
16
A
S:
C
31
G
S:
T
33
C
S:
A
62
C
S:
T
63
C
S:
C
66
T
S:
A
84
G
S:
T
90
C
S:
A
93
G
S:
A
98
T
S:
A
102
G
S:
A
132
G
S:
C
150
T
S:
G
153
A
S:
T
156
C
S:
T
166
C
S:
A
173
G
S:
G
174
A
Show more
Deletions
S:1604, S:1605
Insertions
ins_L:58:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
8
T
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
52
H
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
Show more
Deletions
None
Insertions
None
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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