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LOC_0019PZT.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_0019PZT.1/2023
C. Picard &
S. Baize
Sample details
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2024-01-21
Collection country
France
Isolate name
26AK6
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Institut Pasteur, Virology
INSDC
NCBI release date
2024-01-21
INSDC accession L
PP067069.1
INSDC accession M
PP067087.1
INSDC accession S
PP067051.1
Host
Host taxon id
34627
Host name scientific
Hyalomma marginatum
Alignment and QC metrics L
Length L
11838
Total SNPs L
243
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
97.77%
Total stop codons L
0
Alignment and QC metrics M
Length M
4335
Total SNPs M
476
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
79.44%
Total stop codons M
0
Alignment and QC metrics S
Length S
1449
Total SNPs S
16
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
80.23%
Total stop codons S
0
Submission details
Submission ID
PP067069.1.L/PP067087.1.M/PP067051.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:11:12 UTC
Files
Annotations
LOC_0019PZT.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
G
93
A
L:
A
220
G
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
T
550
A
L:
G
553
A
L:
C
568
T
L:
G
619
A
L:
C
673
T
L:
C
727
T
L:
A
745
G
L:
G
766
A
L:
T
781
C
L:
T
790
C
L:
C
829
T
L:
A
859
G
Show more
M
M:
A
829
G
M:
T
838
G
M:
A
853
G
M:
G
856
C
M:
T
862
C
M:
T
868
C
M:
C
869
T
M:
G
871
A
M:
T
880
C
M:
T
883
C
M:
C
895
T
M:
A
897
G
M:
C
901
T
M:
G
904
A
M:
A
922
G
M:
T
935
C
M:
T
938
C
M:
G
943
A
Show more
S
S:
A
98
T
S:
A
311
G
S:
G
330
A
S:
G
339
A
S:
C
498
T
S:
G
588
A
S:
G
765
A
S:
G
852
A
S:
T
912
C
S:
A
987
G
S:
G
1014
A
S:
C
1035
T
S:
C
1194
A
S:
C
1292
T
S:
T
1413
A
S:
G
1428
A
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
D
250
E
GPC:
K
270
R
GPC:
K
288
R
GPC:
T
298
A
GPC:
K
302
E
GPC:
L
324
P
GPC:
G
336
K
GPC:
S
337
P
GPC:
V
340
A
GPC:
E
341
K
GPC:
T
348
A
GPC:
F
359
Y
GPC:
R
366
G
GPC:
V
407
I
GPC:
I
432
V
GPC:
A
433
L
GPC:
I
438
V
GPC:
T
445
A
Show more
NP
NP:
Y
20
F
NP:
K
91
R
NP:
T
418
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
223
M
RdRp:
I
261
M
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1029
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
H
1161
N
RdRp:
D
1173
N
RdRp:
V
1228
I
RdRp:
N
1244
S
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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