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LOC_0019PQB.1
Download
Download FASTA
Download metadata TSV
Display Name: France/LOC_0019PQB.1/2023
G. Piorkowski,
P. Kiwan,
S. Masse,
N. Ayhan,
R. Charrel,
X. de Lamballerie &
A. Falchi
Sample details
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2024-06-25
Collection country
France
Isolate name
1207
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
IHU mediterranee, UMR190 Unite des Virus Emergents U1207
INSDC
NCBI release date
2024-06-25
INSDC accession L
PP025040.1
INSDC accession M
PP025039.1
INSDC accession S
PP025038.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
11246
Total SNPs L
228
Total inserted nucs L
0
Total deleted nucs L
7
Total ambiguous nucs L
0
Total unknown nucs L
119
Total frame shifts L
0
Completeness L
91.96%
Total stop codons L
0
Alignment and QC metrics M
Length M
5075
Total SNPs M
981
Total inserted nucs M
0
Total deleted nucs M
45
Total ambiguous nucs M
0
Total unknown nucs M
345
Total frame shifts M
0
Completeness M
88.41%
Total stop codons M
0
Alignment and QC metrics S
Length S
1498
Total SNPs S
207
Total inserted nucs S
14
Total deleted nucs S
40
Total ambiguous nucs S
0
Total unknown nucs S
495
Total frame shifts S
0
Completeness S
56.98%
Total stop codons S
0
Submission details
Submission ID
PP025040.1.L/PP025039.1.M/PP025038.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:09:58 UTC
Files
Annotations
LOC_0019PQB.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L
L:
A
859
T
L:
A
901
G
L:
C
904
T
L:
G
951
A
L:
G
961
A
L:
C
1015
T
L:
C
1016
T
L:
C
1019
T
L:
A
1120
G
L:
G
1174
A
L:
C
1240
T
L:
A
1338
G
L:
A
1354
T
L:
T
1420
C
L:
C
1495
T
L:
A
1501
G
L:
C
1549
T
L:
A
1555
G
Show more
M
M:
A
253
T
M:
A
257
G
M:
A
260
G
M:
C
261
A
M:
G
263
A
M:
C
267
T
M:
A
268
G
M:
A
271
G
M:
G
272
A
M:
A
273
G
M:
T
274
C
M:
T
276
C
M:
C
282
T
M:
A
283
C
M:
G
284
A
M:
A
286
C
M:
T
290
C
M:
T
291
C
Show more
S
S:
C
144
T
S:
T
147
C
S:
C
150
T
S:
G
155
A
S:
T
156
C
S:
T
159
G
S:
A
162
G
S:
T
165
C
S:
T
166
C
S:
G
168
T
S:
A
173
G
S:
G
180
A
S:
A
186
G
S:
C
192
T
S:
A
193
G
S:
C
198
A
S:
G
216
A
S:
C
228
T
Show more
Deletions
L:12026-12032, M:5213-5217, M:5245, M:5270-5290, M:5314-5331, S:1490-1504, S:1615-1639
Insertions
ins_S:1524:ATTTGTTCCAGATT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
T
61
A
GPC:
T
62
E
GPC:
A
63
T
GPC:
A
64
V
GPC:
D
66
S
GPC:
M
67
T
GPC:
T
69
I
GPC:
E
70
N
GPC:
L
72
P
GPC:
A
76
V
GPC:
A
77
T
GPC:
G
86
S
GPC:
N
88
D
GPC:
L
89
P
GPC:
P
90
Q
GPC:
R
93
N
GPC:
E
94
R
GPC:
A
95
E
Show more
NP
NP:
S
39
N
NP:
K
45
R
NP:
S
52
G
NP:
F
73
Y
NP:
A
100
T
NP:
A
154
S
NP:
Q
179
L
NP:
R
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
T
420
S
NP:
R
428
K
NP:
I
436
V
RdRp
RdRp:
R
292
Q
RdRp:
H
314
Y
RdRp:
N
421
S
RdRp:
I
505
T
RdRp:
C
648
R
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
D
771
E
RdRp:
E
776
K
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
R
896
S
RdRp:
G
1047
E
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
P
1660
T
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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