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LOC_0019PHR.1
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Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_0019PHR.1/2023-07-14
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
Sample details
Collection date
2023-07-14
Collection date (lower bound)
2023-07-14
Collection date (upper bound)
2023-07-14
Earliest release date
2023-12-26
Collection country
Pakistan
Isolate name
CCHF/NIHPAK-116/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964925.1
INSDC accession M
OR964936.1
INSDC accession S
OR964914.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12098
Total SNPs L
1480
Total inserted nucs L
19
Total deleted nucs L
1
Total ambiguous nucs L
0
Total unknown nucs L
279
Total frame shifts L
0
Completeness L
97.46%
Total stop codons L
0
Alignment and QC metrics M
Length M
5136
Total SNPs M
12
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
248
Total frame shifts M
0
Completeness M
89.57%
Total stop codons M
0
Alignment and QC metrics S
Length S
1598
Total SNPs S
207
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
8
Total frame shifts S
0
Completeness S
88.04%
Total stop codons S
0
Submission details
Submission ID
OR964925.1.L/OR964936.1.M/OR964914.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:09:58 UTC
Files
Annotations
LOC_0019PHR.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
M
M:
G
634
A
M:
A
717
G
M:
C
720
T
M:
T
838
A
M:
G
919
A
M:
T
1000
C
M:
A
1382
G
M:
G
4351
A
M:
T
4444
C
M:
G
4657
A
M:
T
4693
C
M:
A
4723
G
S
S:
C
31
G
S:
T
63
C
S:
A
65
G
S:
A
84
G
S:
A
93
G
S:
A
98
T
S:
A
102
G
S:
C
150
T
S:
G
153
A
S:
T
156
C
S:
T
166
C
S:
A
173
G
S:
G
174
A
S:
G
180
A
S:
A
186
G
S:
C
192
T
S:
C
201
T
S:
G
231
A
Show more
Deletions
L:12034
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12054:TACAATTTT, ins_L:12083:ACTATTC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
210
R
GPC:
S
211
L
GPC:
D
250
E
GPC:
I
432
V
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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