This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0019PGU.1
Download
Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_0019PGU.1/2023-05-01
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
Sample details
Collection date
2023-05-01
Collection date (lower bound)
2023-05-01
Collection date (upper bound)
2023-05-01
Earliest release date
2023-12-26
Collection country
Pakistan
Isolate name
CCHF/NIHPAK-30/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-30 16:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964924.1
INSDC accession M
OR964935.1
INSDC accession S
OR964913.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12134
Total SNPs L
1658
Total inserted nucs L
42
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
1
Total frame shifts L
0
Completeness L
99.86%
Total stop codons L
0
Alignment and QC metrics M
Length M
5336
Total SNPs M
994
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
126
Total frame shifts M
0
Completeness M
95.46%
Total stop codons M
0
Alignment and QC metrics S
Length S
1656
Total SNPs S
219
Total inserted nucs S
3
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.53%
Total stop codons S
0
Submission details
Submission ID
OR964924.1.L/OR964935.1.M/OR964913.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-30 16:05:53 UTC
Date released
2026-01-30 16:09:58 UTC
Files
Annotations
LOC_0019PGU.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
M
M:
G
46
T
M:
G
52
A
M:
A
53
C
M:
G
65
A
M:
A
66
G
M:
T
67
A
M:
A
76
G
M:
T
78
C
M:
T
79
C
M:
G
80
T
M:
C
88
T
M:
C
92
T
M:
T
94
C
M:
T
96
C
M:
T
98
C
M:
T
101
C
M:
G
103
A
M:
A
104
C
Show more
S
S:
T
16
A
S:
C
31
G
S:
T
32
C
S:
G
34
A
S:
A
39
G
S:
A
45
G
S:
C
48
T
S:
A
69
G
S:
G
75
A
S:
A
84
G
S:
A
98
T
S:
T
141
C
S:
C
150
T
S:
C
171
T
S:
A
173
G
S:
G
174
A
S:
G
180
A
S:
C
183
T
Show more
Deletions
None
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12054:TACAATTT, ins_L:12083:ACTATTC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGG, ins_M:5165:A, ins_S:0:CGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
F
10
L
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
N
30
S
GPC:
T
32
A
GPC:
H
33
S
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
S
52
G
NP:
S
65
A
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
94
Q
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
I
223
V
RdRp:
N
236
S
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue