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LOC_0017E9M.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_0017E9M.1/2023-05-01
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-05-01
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-31/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964921.1
INSDC accession M
OR964932.1
INSDC accession S
OR964910.1
Submission details
Submission ID
OR964921.1.L/OR964932.1.M/OR964910.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017E9M.1.embl
Alignment and QC
Total SNPs S
216
Total inserted nucs S
3
Length S
1651 (91.3%)
Variant S
False
Total SNPs L
1653
Total inserted nucs L
51
Total deleted nucs L
1
Total unknown nucs L
2
Length L
12158 (100%)
Variant L
False
Total SNPs M
26
Total inserted nucs M
1
Total unknown nucs M
50
Length M
5334 (96.8%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
T
61
C
G
226
A
G
634
A
C
720
T
T
804
C
C
817
T
T
1000
C
A
1130
G
T
1195
C
G
1255
A
T
1330
A
A
1382
G
C
1711
T
A
1828
G
A
2005
T
A
2612
G
A
2683
G
T
2728
C
Show more
S segment
T
16
A
C
31
G
T
63
C
A
65
G
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
Show more
Deletions
L segment
12034
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12054:TACAATTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGATTT
M segment
ins_5215:N
S segment
ins_0:CGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
S
211
L
GPC:
I
239
T
GPC:
T
348
A
GPC:
I
432
V
GPC:
I
842
V
NP
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
N
236
S
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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