This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017E4X.1

Display Name: Spain/LOC_0017E4X.1/2016
K. E. Leon, R. D. Schubert, D. Casas-Alba, I. A. Hawes, P. S. Ramachandran, A. Ramesh, J. E. Pak, W. Wu, C. K. Cheung, E. D. Crawford, L. M. Khan, C. Launes, H. A. Sample, K. C. Zorn, M. Cabrerizo, A. Valero-Rello, C. Langelier, C. Munoz-Almagro, J. L. DeRisi, M. R. Wilson & A. Vallero-Rello

Sample details

Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2020-03-24
Collection country
Spain
Collection subdivision level 1
Catalonia
Isolate name
16L

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of California, San Francisco, Medical Scientist Training Program

INSDC

NCBI release date
2020-03-24
NCBI update date
2020-03-24
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7368
Total SNPs
1377
Total inserted nucs
8
Total deleted nucs
6
Total ambiguous nucs
29
Total unknown nucs
2
Total frame shifts
0
Completeness
99.01%
Total stop codons
0

Submission details

Submission ID
MN515037.1
Submitting group
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • A26G
  • T36C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
  • A76G
  • T99C
  • G100T
  • A123G
  • A124C
  • C126T
  • T135C
  • T138C
    • Deletions
    698-700, 706, 7339, 7340
    Insertions
    ins_93:T, ins_104:C, ins_128:CT, ins_686:ATTA

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    2A

  • 2A:T26N
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102V
  • 2A:S129N

    • 2B

  • 2B:R11D

    • 2C

  • 2C:F22S
  • 2C:N48S
  • 2C:V60I
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T214A
  • 2C:Y243F
  • 2C:T271S

    • 3A

  • 3A:E39D

    • 3B

  • 3B:A6V
  • 3B:P9Q
  • 3B:I10T

    • 3C

  • 3C:A18V
  • 3C:I36V
  • 3C:V49I
  • 3C:I54V
  • 3C:C89F
  • 3C:V93S
  • 3C:T95S
  • 3C:I109M
  • 3C:P144A
  • 3C:A169G
  • 3C:G173S
  • 3C:S177G

    • 3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T44H
  • 3D:V74I
  • 3D:T75R
  • 3D:Q76E
  • 3D:D89G
  • 3D:N91D
  • 3D:K94Q
  • 3D:E105D
  • 3D:Y106N
  • 3D:V134T
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:L165M

    • VP1

  • VP1:V16M
  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:S241P
  • VP1:E244K
  • VP1:S246P
  • VP1:I262V
  • VP1:S275A
  • VP1:D282N

    • VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:M198I
  • VP2:T200A

    • VP3

  • VP3:M100L
  • VP3:T232S
  • VP3:E237Q
  • VP3:A239G
    • Deletions
    None
    Insertions
    None

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