This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017DZ7.1

Viet_Nam/LOC_0017DZ7.1/2014
N. Le Nguyen Truc, A. Nguyen To, N. Le Nguyen Thanh, H. Nguyen Thi Thu, V. Hoang Minh Tu, T. Tran Tan, H. Vu Thi Ty, H. Do Duong Kim, N. Nguyen Thi Han, N. Lam Anh, Q. Du Tuan, Q. Phan Tu, K. Truong Huu, H. Nguyen Thanh, T. Ha Manh, C. Nguyen Van Vinh, G. Thwaites, R. van Doorn & T. Le Van

Oxford University Clinical Research Unit, Emerging Infections

Sample details

Collection date
2014
Earliest release date
2021-06-28
Sampling location
Viet Nam
Isolate name
03EI-02-1-122

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-06-28
NCBI update date
2021-06-28
INSDC accession

Host

Host

Submission details

Submission ID
MW999254.1
Submitting group
Date submitted
2026-09-09 16:34:26 UTC
Date released
2026-09-09 16:45:10 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
1426
Total deleted nucs
3
Length
6337 (85.5%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • A665G
  • A673G
  • G682A
  • T685C
  • A686G
  • A688C
  • A691T
  • C696A
  • A697T
  • C699T
  • A706G
  • A707G
  • C708T
  • C710A
  • C712T
  • G713A
  • C715A
  • A718T
Deletions
702-704
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

2A

  • 2A:R68K
  • 2A:S77T
  • 2A:V121I

2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

2C

  • 2C:N23S
  • 2C:I228V
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

3A

  • 3A:P3L
  • 3A:R6K
  • 3A:D39E
  • 3A:T49A
  • 3A:I61V

3B

  • 3B:T10A
  • 3B:I15V

3C

  • 3C:V36I
  • 3C:I56V
  • 3C:I86V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V103I
  • 3C:V157I
  • 3C:S177G

3D

  • 3D:V6M
  • 3D:I17V
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106Y
  • 3D:T134V
  • 3D:V138T
  • 3D:S139T
  • 3D:L152M
  • 3D:I165L
  • 3D:A190T
  • 3D:I205V

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K

VP2

  • VP2:I32V
  • VP2:K43P
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:A226T
  • VP2:I252V

VP3

  • VP3:A33P
  • VP3:R41H
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141N
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
Deletions
N/A
Insertions
N/A

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