This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017DUH.1

China/LOC_0017DUH.1/1988
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1988
Earliest release date
2023-08-21
Sampling location
China
Isolate name
88168

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047182.1.L/OR047162.1.M/OR047142.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Files

Annotations

Alignment and QC

Total SNPs M
1087
Total inserted nucs M
275
Total deleted nucs M
31
Length M
5701 (100%)
Variant M
False
Total SNPs S
241
Total inserted nucs S
110
Total deleted nucs S
75
Length S
1810 (98.3%)
Variant S
False
Total SNPs L
1662
Total inserted nucs L
231
Length L
12339 (100%)
Variant L
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • C2A
  • T3C
  • A6C
  • A9T
  • A14C
  • T16A
  • G23T
  • A35G
  • G43C
  • T49C
  • G56A
  • T58C
  • C59T
  • T62C
  • C64T
  • T65G
  • T67C
  • G71T

M segment

  • A2G
  • A3T
  • G4A
  • A5G
  • A6G
  • T8G
  • A9T
  • C10T
  • T11G
  • T12G
  • G46T
  • A47G
  • G52A
  • A53C
  • G65A
  • A66G
  • T67A
  • A76G

S segment

  • G1C
  • C2A
  • G4T
  • C5T
  • T7C
  • A8C
  • C9T
  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
Deletions

M segment

5353-5383

S segment

1596, 1597, 1655-1719, 1754-1761
Insertions

L segment

ins_0:ATTAGCTCTAGAAT, ins_16:GTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTC, ins_67:CC, ins_11928:TG, ins_12065:CAATTATTAGTTTGCCTT, ins_12089:TCACTATTCAT, ins_12108:TTATTTCCAGGGTGTGGGGGGAACGATTTCTTTAGCCGTTGCGGGCCGGCCTTCTCTGCGCTCGGGCCTTGAGGTGATCTCCGAGCGCCCCGGACCCCTCCTTCCTCGCCGTCCCCCTCGGCTCGGCCGCTCGCCTCTCACA

M segment

ins_0:TCTCTAAGAGACCTGAGTGAGCCCCACCCCCAACTCCTAAGCAGCGGCTCAACAAGGAGGTGGCATCACAGACTCTGATGAGGTATGAACAGGCCTCTCACGAGTGAAAACTTCTGGTTTCAGTGTTTTTGAAAATGTTTCTGCTTCTGTGTGCTTCTTGTGGACTGTAGGTGGTCTACCCTGATGGTGTGTGTTAGCTTTAATATCTGATACGTCCTCTATCCGAGGACAATATATTAAATGGATTTTTGGA, ins_5165:A, ins_5457:ACCCGGCGGCTCCTCCACTCT

S segment

ins_0:TCTTCAAACCACTTGTTCATTTCATCTTTGTTATTCACCTCGATTTTATTCTCCATTTTGCATCTCAATTGATTGTTCACAGTCAGTTACAGATTGAACTCCTGTTCTA, ins_1514:T

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:C15W
  • GPC:G16S
  • GPC:G18K
  • GPC:K19G
  • GPC:T20S
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26K
  • GPC:E28Q
  • GPC:N30S
  • GPC:H33S

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S281T
Deletions
N/A
Insertions
N/A

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