This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017DTK.1

China/LOC_0017DTK.1/1970
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1970
Earliest release date
2023-08-21
Sampling location
China
Isolate name
A7001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047181.1.L/OR047161.1.M/OR047141.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
244
Total inserted nucs S
199
Total deleted nucs S
2
Length S
1828 (90.3%)
Variant S
False
Total SNPs L
1662
Total inserted nucs L
96
Length L
12197 (99.9%)
Variant L
False
Total SNPs M
1027
Total inserted nucs M
1
Length M
5323 (97.5%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G8A
  • A9T
  • T10C
  • A11T
  • G23T
  • A35G
  • G43C
  • T49C
  • G56A
  • T58C
  • C59T
  • T62C
  • C64T
  • T65G
  • T67C
  • G71T
  • A72T
  • A73G

M segment

  • G46T
  • A47G
  • G52A
  • A53C
  • G65A
  • A66G
  • T67A
  • A76G
  • C77T
  • T78C
  • G80T
  • A84G
  • A86G
  • C88T
  • C92T
  • T94C
  • T96C
  • T98C

S segment

  • G4A
  • T7G
  • A8C
  • G10A
  • C13T
  • A14T
  • G17C
  • T23C
  • T25A
  • T26G
  • T30A
  • T32C
  • G35T
  • A45G
  • C81T
  • A84G
  • A98T
  • A102G
Deletions

S segment

19, 20
Insertions

L segment

ins_67:CC, ins_11928:TG, ins_12065:CAATTATTAGTTTGCCTT, ins_12089:TCACTATTCAT, ins_12108:TTATTTCCAGGGTGTGGGGGGAACGGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCT

M segment

ins_5165:A

S segment

ins_0:CACAAAGCCAAGTGCAAACGGCTTTTCATCGTTTGCTGACATCTGTTTGCTGAGCAGTTAGGAGGCTGGCCTTGAGGATCATAACATCAGCATGTAGAGTGGGCTGTCTGCCATGACAGTCTGCTAGTAACAGCTAGAGTAGCCTTCCCCCTAAA, ins_37:TCTGGTTACATGGATGATGTCAAGCCGGAATCAGTGAAAGGCAA

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:K19G
  • GPC:T20S
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26K
  • GPC:E28Q
  • GPC:N30S
  • GPC:H33S

NP

  • NP:Y20F
  • NP:K45R
  • NP:K91R
  • NP:D116E
  • NP:N125D
  • NP:A146T
  • NP:N150H
  • NP:Q179L
  • NP:N188S
  • NP:D199E
  • NP:D262N
  • NP:R270K
  • NP:M353L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:D191N
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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