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LOC_0017DSM.1
Download
Download FASTA
Download metadata TSV
China/LOC_0017DSM.1/1973
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
1973
Earliest release date
2023-08-21
Sampling location
China
Isolate name
A73017
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047180.1
INSDC accession M
OR047160.1
INSDC accession S
OR047140.1
Submission details
Submission ID
OR047180.1.L/OR047160.1.M/OR047140.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017DSM.1.embl
Alignment and QC
Total SNPs M
644
Total inserted nucs M
13
Total deleted nucs M
18
Length M
5401 (99.1%)
Variant M
False
Total SNPs L
1612
Total inserted nucs L
60
Length L
12168 (100%)
Variant L
False
Total SNPs S
184
Total inserted nucs S
13
Length S
1501 (82.4%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
A
35
G
G
43
C
T
49
C
A
50
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
C
136
T
Show more
M segment
G
28
T
T
64
C
G
65
A
G
72
A
A
76
G
T
78
C
C
82
T
A
84
G
C
88
T
A
108
G
T
116
C
C
118
T
A
127
G
G
132
A
C
133
T
A
139
G
A
143
G
G
145
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
G
75
A
A
84
G
A
98
T
A
102
G
A
122
T
C
123
T
C
126
T
A
130
C
A
140
C
T
141
C
C
150
T
A
154
G
Show more
Deletions
M segment
5285-5295, 5355-5361
Insertions
L segment
ins_58:T, ins_11930:AA, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACTTTTTCTTTGAGA
M segment
ins_0:CTTC, ins_5166:A, ins_5391:CAGTCTCA
S segment
ins_0:CAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
Y
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
H
24
S
GPC:
G
26
E
GPC:
N
31
K
GPC:
H
33
N
GPC:
M
35
V
GPC:
D
39
G
GPC:
P
44
R
GPC:
E
45
G
GPC:
P
47
L
GPC:
V
48
G
GPC:
A
51
T
GPC:
P
56
L
Show more
NP
NP:
Y
20
F
NP:
D
28
V
NP:
T
31
P
NP:
Y
34
S
NP:
S
39
G
NP:
D
44
E
NP:
K
45
G
NP:
V
47
G
NP:
Q
49
R
NP:
S
52
G
NP:
D
56
G
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
K
206
I
NP:
R
270
K
NP:
S
275
N
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
I
45
M
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
D
88
A
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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