This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017DJ3.1

China/LOC_0017DJ3.1/1969
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1969
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA69034

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047172.1.L/OR047152.1.M/OR047132.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
659
Total inserted nucs M
14
Total deleted nucs M
53
Length M
5418 (100%)
Variant M
False
Total SNPs S
222
Total inserted nucs S
18
Total deleted nucs S
11
Length S
1673 (92.2%)
Variant S
False
Total SNPs L
1627
Total inserted nucs L
74
Length L
12180 (100%)
Variant L
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • A7T
  • G8A
  • A11T
  • T12A
  • C13A
  • C18A
  • C19G
  • C20A
  • C21A
  • G23C
  • T24A
  • A26G
  • C27G
  • C28A
  • C29A
  • A35T
  • A36T
  • A38C

M segment

  • A1T
  • A2T
  • A3C
  • G4A
  • A6G
  • T8G
  • A9G
  • C10G
  • T11C
  • T12A
  • T64C
  • G65A
  • G72A
  • A76G
  • T78C
  • C82T
  • A84G
  • C88T

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

M segment

5285-5295, 5374-5415

S segment

1596, 1597, 1639-1647
Insertions

L segment

ins_33:GG, ins_58:T, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACCCCCCCACTACCACAAATTATGCAG

M segment

ins_0:GAGAGAG, ins_5166:A, ins_5352:CAATT, ins_5457:C

S segment

ins_0:CGGCTACCGATCACAGT, ins_1514:T

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H24S
  • GPC:G26E
  • GPC:N31K
  • GPC:H33N
  • GPC:M35V
  • GPC:D39G
  • GPC:P47L
  • GPC:A51T
  • GPC:P56L
  • GPC:P58S
  • GPC:S64T
  • GPC:L70P

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:K208T
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:H59Y
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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