This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017DCG.1

Turkey/LOC_0017DCG.1/2019
A. T. Kalaycioglu, R. Durmaz, O. Ari, M. Bakir, A. Engin & T. Dal

Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Sample details

Collection date
2019
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-SIVAS-C20M-2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-15
INSDC accession L
INSDC accession M

Submission details

Submission ID
OQ954478.1.L/OQ935554.1.M
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
50
Length L
468 (3.87%)
Variant L
False
Total SNPs M
107
Length M
687 (12.6%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

L segment

  • C6715T
  • A6724G
  • A6730G
  • G6733T
  • T6745C
  • G6748A
  • A6751G
  • C6757T
  • T6760A
  • C6766T
  • T6769C
  • A6784T
  • T6800C
  • G6805A
  • A6808T
  • A6811G
  • T6841C
  • A6850G

M segment

  • G1744A
  • C1750T
  • T1756C
  • T1759C
  • T1768C
  • G1769A
  • A1780G
  • T1789C
  • G1798A
  • C1807T
  • T1810C
  • T1816C
  • A1819G
  • G1824A
  • G1841A
  • T1849C
  • G1861A
  • G1863C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:V561I
  • GPC:R579K
  • GPC:E585K
  • GPC:S592T
  • GPC:I598T
  • GPC:K603R
  • GPC:Y606F
  • GPC:V630A
  • GPC:V663I
  • GPC:K669H
  • GPC:K675R
  • GPC:I711L
  • GPC:F713Y
  • GPC:L714S
  • GPC:F718I
  • GPC:R724K
  • GPC:F725I
  • GPC:T742A

RdRp

  • RdRp:A2330T
Deletions
N/A
Insertions
N/A

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