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LOC_0017D8Q.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_0017D8Q.1/2017
A. T. Kalaycioglu,
R. Durmaz,
O. Ari,
M. Bakir,
A. Engin &
T. Dal
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2017
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-SIVAS-C47F-2017
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-15
INSDC accession L
OQ954474.1
INSDC accession M
OQ935549.1
Submission details
Submission ID
OQ954474.1.L/OQ935549.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017D8Q.1.embl
Alignment and QC
Total SNPs L
50
Length L
468 (3.87%)
Variant L
False
Total SNPs M
117
Length M
727 (13.3%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
L segment
C
6715
T
A
6724
G
A
6730
G
G
6733
T
T
6742
C
T
6745
C
G
6748
A
C
6757
T
T
6760
A
C
6766
T
T
6769
C
A
6784
T
T
6800
C
G
6805
A
A
6808
T
A
6811
G
A
6850
G
T
6862
C
Show more
M segment
C
1688
T
G
1699
A
T
1702
A
G
1709
A
C
1711
T
G
1716
A
C
1717
T
T
1732
C
G
1744
A
C
1750
T
T
1756
C
T
1759
C
G
1769
A
A
1780
G
T
1789
C
G
1798
A
C
1807
T
T
1810
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
V
541
I
GPC:
G
543
D
GPC:
V
561
I
GPC:
R
579
K
GPC:
S
592
T
GPC:
I
598
T
GPC:
K
603
R
GPC:
Y
606
F
GPC:
V
663
I
GPC:
K
669
H
GPC:
I
670
V
GPC:
K
675
R
GPC:
L
707
F
GPC:
I
711
L
GPC:
F
713
Y
GPC:
L
714
S
GPC:
F
718
I
GPC:
R
724
K
GPC:
T
742
A
RdRp
RdRp:
A
2330
T
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
L (aligned)
M (aligned)
Aligned amino acid sequences
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