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LOC_0017D7S.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_0017D7S.1/2015
A. T. Kalaycioglu,
R. Durmaz,
O. Ari,
M. Bakir,
A. Engin &
T. Dal
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2015
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-TOKAT-C42M-2015
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-15
INSDC accession L
OQ954473.1
INSDC accession M
OQ935548.1
INSDC accession S
OQ954465.1
Submission details
Submission ID
OQ954473.1.L/OQ935548.1.M/OQ954465.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017D7S.1.embl
Alignment and QC
Total SNPs L
51
Length L
468 (3.87%)
Variant L
False
Total SNPs M
93
Length M
554 (10.2%)
Variant M
False
Total SNPs S
74
Length S
519 (28.7%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
C
6715
T
A
6724
G
A
6730
G
G
6733
T
T
6745
C
G
6748
A
A
6751
G
C
6757
T
T
6760
A
C
6766
T
T
6769
C
A
6784
T
T
6800
C
G
6805
A
A
6808
T
A
6811
G
A
6850
G
T
6859
C
Show more
M segment
G
1744
A
C
1750
T
T
1756
C
T
1759
C
T
1768
C
G
1769
A
A
1780
G
T
1789
C
G
1798
A
C
1807
T
T
1810
C
T
1816
C
A
1819
G
G
1824
A
G
1841
A
T
1849
C
G
1861
A
G
1863
C
Show more
S segment
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
A
186
G
T
195
C
C
201
A
A
213
G
T
219
C
C
228
T
G
231
A
T
234
G
G
240
A
G
246
A
A
252
C
A
255
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
561
I
GPC:
R
579
K
GPC:
E
585
K
GPC:
S
592
T
GPC:
I
598
T
GPC:
K
603
R
GPC:
Y
606
F
GPC:
V
630
A
GPC:
V
663
I
GPC:
K
669
H
GPC:
K
675
R
GPC:
L
707
F
GPC:
A
710
V
GPC:
I
711
L
GPC:
F
713
Y
GPC:
L
714
S
GPC:
F
718
I
GPC:
R
724
K
GPC:
F
725
I
NP
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
A
2330
T
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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