This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017D6U.1

USA/LOC_0017D6U.1/2002-01-01
M. R. Henn, R. M. Newman, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, E. Heilman, C. Howarth, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2002
Earliest release date
2011-01-10
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4203/2002

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-01-10
NCBI update date
2011-01-10
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HQ671698.1
Submitting group
Date submitted
2026-10-05 17:01:12 UTC
Date released
2026-10-05 17:10:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
24
Total deleted nucs
1
Length
10554 (95.7%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:S181P
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:M144I
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • C711T
  • G897A
  • T1442C
  • C1465T
  • C2466T
  • T3010C
  • C4107T
  • A4146G
  • C4189T
  • T4398C
  • C4803T
  • G5280A
  • C6138T
  • C6183T
  • C6291T
  • T6405C
Deletions
10524
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:S181P

env

  • env:V159A
  • env:L167F

prM

  • prM:M144I
Deletions
N/A
Insertions
N/A

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