This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017CZ8.1

unknown/LOC_0017CZ8.1/unknown
M. R. Henn, R. M. Newman, D. Young, A. Ciota, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Earliest release date
2011-03-12
Isolate name
WNV-1/Gallus/BID-V4959/kidney

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-03-12
NCBI update date
2011-03-12
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HQ671692.1
Submitting group
Date submitted
2026-10-05 17:01:12 UTC
Date released
2026-10-05 17:10:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
28
Total inserted nucs
9
Total deleted nucs
1
Length
10624 (96.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:M34L
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:T409A
  • prM:K9R
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G9A
  • A491G
  • A630G
  • T1442C
  • C1465T
  • G2076A
  • A2191G
  • C2388T
  • C2466T
  • C2604T
  • A3270G
  • A3625T
  • C3774T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • C6138T
Deletions
10487
Insertions
ins_9:GAACACAAC

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:M34L

NS4A

  • NS4A:A85T

env

  • env:V159A
  • env:L167F
  • env:T409A

prM

  • prM:K9R
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue