This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017CBK.1

Display Name: United_Kingdom/LOC_0017CBK.1/2018-09-06
H. C. Howson-Wells & G. Clark

Sample details

Collection date
2018-09-06
Collection date (lower bound)
2018-09-06
Collection date (upper bound)
2018-09-06
Earliest release date
2021-12-14
Collection country
United Kingdom
Isolate name
NUH_EVD68_2/Nottingham/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nottingham, School of Life Sciences

INSDC

NCBI release date
2021-12-14
NCBI update date
2021-12-14
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
930
Total SNPs
141
Total inserted nucs
0
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.66%
Total stop codons
0

Submission details

Submission ID
MZ576284.1
Submitting group
Date submitted
2026-02-13 18:06:14 UTC
Date released
2026-02-13 18:19:09 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2389C
  • C2390T
  • A2392G
  • C2394A
  • C2397T
  • G2405A
  • A2406G
  • T2421C
  • G2424A
  • G2427T
  • T2433C
  • C2436T
  • A2442G
  • T2451C
  • T2454C
  • G2463A
  • G2469A
  • C2478T
    • Deletions
    2806-2808
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    2A

  • 2A:G1N
  • 2A:P2T

    • VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95E
  • VP1:G97R
  • VP1:T98V
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:K168E
  • VP1:E169K
  • VP1:I187V
  • VP1:M269L
    • Deletions
    VP1:140
    Insertions
    None

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