This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001780B.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_001780B.1/1960-03
S. Ashraf,
H. Love,
C. Burton,
S. Carmichael,
A. D. Filipe,
S. Roddy,
K. Smollett,
S. Summers,
L. Tong,
K. S. Richards &
E. C. Thomson
University of Glasgow, MRC Centre for Virus Research
Sample details
Collection date
1960-03
Earliest release date
2022-11-14
Sampling location
Uganda
Isolate name
SE65
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-11-14
INSDC accession L
OL741597.1
INSDC accession M
OL741598.1
INSDC accession S
OL741599.1
Submission details
Submission ID
OL741597.1.L/OL741598.1.M/OL741599.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_001780B.1.embl
Alignment and QC
Total SNPs L
2025
Total inserted nucs L
26
Total deleted nucs L
11
Length L
12108 (99.9%)
Variant L
False
Total SNPs S
284
Total inserted nucs S
5
Length S
1659 (91.6%)
Variant S
False
Total SNPs M
909
Length M
5238 (97%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
T
C
48
T
G
57
C
C
59
T
T
61
C
C
63
G
T
65
C
T
70
C
G
71
T
A
72
G
A
73
G
C
82
A
G
93
A
A
109
G
T
115
C
T
131
A
Show more
M segment
T
42
C
G
43
T
G
45
T
C
47
A
A
50
G
C
51
T
G
53
T
A
54
G
A
55
T
G
56
A
G
57
A
A
61
G
T
64
C
C
65
A
A
73
C
G
75
A
T
83
C
A
87
G
Show more
S segment
T
16
A
C
31
G
A
45
G
C
54
T
A
62
C
A
65
G
A
69
G
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
G
106
A
A
108
C
A
114
T
T
128
A
C
138
T
T
141
C
Show more
Deletions
L segment
12074-12084
Insertions
L segment
ins_61:C, ins_11967:GA, ins_12108:GGGTGTGGGGGGAACGATTTCTT
S segment
ins_0:CACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
F
3
L
GPC:
H
4
R
GPC:
F
5
Y
GPC:
N
12
S
GPC:
F
15
L
GPC:
C
16
G
GPC:
I
18
F
GPC:
S
21
G
GPC:
G
24
E
GPC:
L
25
P
GPC:
D
27
H
GPC:
E
28
G
GPC:
A
29
T
GPC:
R
30
Q
GPC:
M
35
V
GPC:
T
36
A
GPC:
Q
37
R
GPC:
G
38
S
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
F
30
Y
NP:
S
39
N
NP:
K
45
R
NP:
A
53
S
NP:
K
91
R
NP:
T
111
A
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
277
V
NP:
L
280
I
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
T
65
A
RdRp:
S
67
A
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
201
G
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue