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LOC_00177ZD.1
Download
Download FASTA
Download metadata TSV
United_Kingdom/LOC_00177ZD.1/2014-06
S. Ashraf,
H. Love,
C. Burton,
S. Carmichael,
A. D. Filipe,
S. Roddy,
K. Smollett,
S. Summers,
L. Tong,
K. S. Richards &
E. C. Thomson
University of Glasgow, MRC Centre for Virus Research
Sample details
Collection date
2014-06
Earliest release date
2022-11-14
Sampling location
United Kingdom
Isolate name
UK2
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-11-14
INSDC accession L
OL741594.1
INSDC accession M
OL741595.1
INSDC accession S
OL741596.1
Submission details
Submission ID
OL741594.1.L/OL741595.1.M/OL741596.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_00177ZD.1.embl
Alignment and QC
Total SNPs M
1051
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5334 (97.8%)
Variant M
False
Total SNPs L
1247
Total inserted nucs L
3
Length L
11949 (98.7%)
Variant L
False
Total SNPs S
252
Length S
1634 (90.5%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
G
32
A
A
35
G
A
42
T
G
43
C
T
49
C
A
50
G
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
C
82
T
A
91
G
G
93
A
Show more
M segment
T
36
A
G
46
A
A
47
G
T
63
C
T
64
C
T
67
A
G
69
T
G
72
C
A
76
G
T
78
C
G
80
A
T
81
C
C
88
T
T
90
C
T
96
C
T
98
C
C
99
T
G
103
A
Show more
S segment
T
16
A
C
31
G
T
33
C
G
34
T
A
51
G
T
63
C
A
65
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
Show more
Deletions
M segment
317-319
Insertions
L segment
ins_67:C, ins_11928:CG
M segment
ins_5167:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
F
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
G
22
V
GPC:
P
23
Q
GPC:
H
24
S
GPC:
G
26
A
GPC:
N
30
D
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
K
72
R
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
T
65
A
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
T
215
S
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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