This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_00177YF.1
Download
Download FASTA
Download metadata TSV
United_Arab_Emirates/LOC_00177YF.1/1979-12
S. Ashraf,
H. Love,
C. Burton,
S. Carmichael,
A. D. Filipe,
S. Roddy,
K. Smollett,
S. Summers,
L. Tong,
K. S. Richards &
E. C. Thomson
University of Glasgow, MRC Centre for Virus Research
Sample details
Collection date
1979-12
Earliest release date
2022-11-14
Sampling location
United Arab Emirates
Isolate name
Dubai 616
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2022-11-14
INSDC accession L
OL741591.1
INSDC accession M
OL741592.1
INSDC accession S
OL741593.1
Submission details
Submission ID
OL741591.1.L/OL741592.1.M/OL741593.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_00177YF.1.embl
Alignment and QC
Total SNPs M
518
Total inserted nucs M
65
Total deleted nucs M
3
Length M
5519 (100%)
Variant M
False
Total SNPs L
1681
Total inserted nucs L
52
Length L
12144 (99.9%)
Variant L
False
Total SNPs S
244
Total deleted nucs S
32
Length S
1675 (94.5%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
A
36
T
A
40
G
G
41
A
G
43
C
A
44
G
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
C
G
93
A
T
97
C
A
109
G
A
124
G
Show more
M segment
T
36
C
G
51
A
G
65
A
T
67
C
T
78
C
G
106
A
T
116
C
A
127
G
C
133
T
A
143
G
G
145
A
T
148
C
A
149
C
G
152
A
C
155
T
C
158
G
C
160
A
G
166
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
G
60
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
Show more
Deletions
M segment
5385-5387
S segment
1637-1649, 1665-1671, 1688-1699
Insertions
L segment
ins_58:T, ins_11922:TC, ins_12092:GCTAATACACTTTCCTCACTGTTCTTATC, ins_12108:TATTTCCAGGGTGTGGGGGG
M segment
ins_0:ACACTGCTGT, ins_5166:GG, ins_5457:GCACGAGCGGGGAAGCCCCAGAGTGAAATCTAGCATCCTGCCGGCTGGTCTGC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
6
I
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
G
22
R
GPC:
P
23
S
GPC:
H
24
E
GPC:
N
31
K
GPC:
H
33
I
GPC:
V
34
T
GPC:
T
36
A
GPC:
D
39
G
GPC:
P
46
L
GPC:
P
56
L
GPC:
S
64
T
GPC:
T
65
A
GPC:
G
69
R
GPC:
L
70
F
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
S
52
G
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
A
RdRp:
N
206
Y
RdRp:
I
223
M
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
409
G
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue