This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177XH.1

Uganda/LOC_00177XH.1/2021-04-27
L. Nyakarahuka, S. Whitmer, J. Kyondo, S. Mulei, C. M. Cossaboom, C. T. Telford, A. Tumusiime, G. G. Akurut, D. Namanya, K. Kamugisha, J. Baluku, J. Lutwama, S. Balinandi, T. Shoemaker, J. D. Klena & S. L. M. Whitmer

The Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2021-04-27
Earliest release date
2022-10-19
Sampling location
Uganda (Kikuube district)
Isolate name
2021000741

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-10-19
INSDC accession M
INSDC accession S

Submission details

Submission ID
OL690430.1.M/OL690431.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
1098
Total inserted nucs M
31
Total deleted nucs M
4
Total ambiguous nucs M
2
Total unknown nucs M
967
Length M
5348 (80.6%)
Variant M
False
Total SNPs S
258
Total deleted nucs S
1
Total ambiguous nucs S
1
Total unknown nucs S
50
Length S
1568 (84.1%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

M segment

  • G26A
  • T27G
  • C28T
  • G29A
  • G32T
  • C33A
  • G34A
  • T35G
  • G36T
  • G38T
  • A39T
  • T42C
  • G43T
  • G45T
  • C47A
  • A50G
  • C51T
  • G53C

S segment

  • C31G
  • A45G
  • C48T
  • A62C
  • A65G
  • A69G
  • A83G
  • A84G
  • A98T
  • A102G
  • G106A
  • A108C
  • A114T
  • G120A
  • T128A
  • C138T
  • T141C
  • C150T
Deletions

M segment

5181-5184

S segment

1500
Insertions

M segment

ins_5264:TCATCACTTCTTCGTCTGCCTTTCGTCACCT

Amino acid mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:M1T
  • GPC:L2M
  • GPC:H4F
  • GPC:F5L
  • GPC:E6R
  • GPC:H7L
  • GPC:M8V
  • GPC:N12S
  • GPC:F13L
  • GPC:V14A
  • GPC:I18L
  • GPC:W20E
  • GPC:S21G
  • GPC:G22N
  • GPC:G23D
  • GPC:L25I
  • GPC:A26T
  • GPC:D27S

NP

  • NP:N8T
  • NP:N9S
  • NP:K15R
  • NP:Y20F
  • NP:G23S
  • NP:F30Y
  • NP:K45R
  • NP:T111A
  • NP:D116G
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:I277V
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:R428K
Deletions
N/A
Insertions
N/A

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