This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177VM.1

USA/LOC_00177VM.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession M
Bioproject accession
Biosample accession
Raw reads accession

Submission details

Submission ID
OK573221.1.M
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Files

Annotations

Alignment and QC

Total SNPs M
224
Total inserted nucs M
79
Total deleted nucs M
43
Total frame shifts M
1
Frame shifts M
GPC:181-1685(nt:629-5143)
Length M
781 (13.7%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • A3G
  • G4T
  • A5T
  • T8C
  • G13A
  • G16T
  • C17A
  • A18C
  • C19T
  • T21A
  • A23G
  • G24T
  • T25G
  • A26C
  • T29C
  • G34A
  • A37T
  • G46A
Deletions

M segment

38, 521-562
Insertions

M segment

ins_0:TGATATATGCATGATGTTAGCAGGTATGCTGCAATTAAGATGCTCAATCCACTTCCTCA, ins_628:CTGCATGCCTGTATCTT, ins_707:GAA

Amino acid mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:V9I
  • GPC:F10L
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:G26E
  • GPC:E28R
  • GPC:N31K
  • GPC:H33D
  • GPC:V34T
  • GPC:D39G
  • GPC:S41N
  • GPC:Q42P
  • GPC:P44S
  • GPC:P53S
  • GPC:V54I
  • GPC:P56L
  • GPC:S64T
Deletions
N/A
Insertions
N/A

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